PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00030873001

Common Name

GSBRNA2T00030873001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 263aa MW: 29346.7 Da PI: 8.0848

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00030873001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.1e-33	35	88	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR GSBRNA2T00030873001 35 PRLRWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 88 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.335	31	91	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-30	31	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	35	88	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.09E-14	35	87	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-8	36	87	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MGKAAGRNGN ENYNGVGFNG QRGGGVRPYV RSPVPRLRWT PDLHRCFVNA VDMLGGQHRA 60 TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKPEESS SSSIRRQDTE EDNFHDNLSL 120 HTRNDCLLGF HSFPLSSHSS LRGGRKKEQT SESSGDDDAD ADFLHTMNMK KTKETTMFRS 180 HHFHKKTEKE KNTWQEHEEE EDLSLSLSLN HHHWRSNGSS VSETSEAVST CSAPFIFKDC 240 LGSSPKIDLN LDLNLSISLL GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00030873001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129176.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
Swissprot	Q700D9	6e-77	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A078F8F8	0.0	A0A078F8F8_BRANA; BnaA02g26180D protein
TrEMBL	M4ECV8	0.0	M4ECV8_BRARP; Uncharacterized protein
STRING	Bra026618.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-61	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]